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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
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* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0

cluster 1(N=151) has 2 sub-cluster at 2 (13), ICL=129<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (13), ICL=0<>26
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 18 iterations

cluster 2(N=76) has 2 sub-cluster at 2 (6), ICL=101<>30
split 2 into 2 clusters
cluster 1(N=227) has 2 sub-cluster at 2 (7), ICL=44<>30
split 1 into 2 clusters
cluster 1(N=227) has 2 sub-cluster at 2 (7), ICL=0<>30
Model Refinement takes 0.05 mins(max 1: 0.033)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 13 iterations

cluster 3(N=88) has 2 sub-cluster at 2 (6), ICL=48<>34
split 3 into 2 clusters
cluster 2(N=53) has 2 sub-cluster at 2 (5), ICL=42<>34
split 2 into 2 clusters
cluster 4(N=57) has 3 sub-cluster at 3 (23), ICL=16<>34
cluster 2(N=53) has 2 sub-cluster at 2 (5), ICL=0<>34
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=4->6 N=1210
EM 6 takes 0 mins, 13 iterations

cluster 2(N=76) has 5 sub-cluster at 5 (85), ICL=38<>37
split 2 into 5 clusters
cluster 3(N=51) has 3 sub-cluster at 3 (9), ICL=33<>37
cluster 6(N=116) has 2 sub-cluster at 2 (12), ICL=30<>37
cluster 5(N=44) has 3 sub-cluster at 3 (17), ICL=18<>37
cluster 4(N=140) has 7 sub-cluster at 8 (41), ICL=18<>37
cluster 2(N=76) has 5 sub-cluster at 5 (85), ICL=0<>37
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=6->10 N=2420
EM 9 takes 0.017 mins, 10 iterations

cluster 6(N=121) has 3 sub-cluster at 3 (13), ICL=68<>41
split 6 into 3 clusters
cluster 9(N=239) has 2 sub-cluster at 2 (6), ICL=44<>41
split 9 into 2 clusters
cluster 8(N=99) has 4 sub-cluster at 4 (20), ICL=22<>41
cluster 3(N=35) has 3 sub-cluster at 3 (36), ICL=15<>41
cluster 7(N=297) has 8 sub-cluster at 8 (43), ICL=13<>41
cluster 4(N=47) has 4 sub-cluster at 4 (11), ICL=9.7<>41
cluster 5(N=78) has 3 sub-cluster at 4 (11), ICL=9.7<>41
cluster 3(N=35) has 3 sub-cluster at 3 (36), ICL=0<>41
Model Refinement takes 0.17 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=9->12 N=4841
EM 12 takes 0 mins, 14 iterations

cluster 10(N=181) has 2 sub-cluster at 2 (15), ICL=30<>45
cluster 4(N=122) has 5 sub-cluster at 5 (26), ICL=29<>45
cluster 12(N=458) has 3 sub-cluster at 3 (29), ICL=26<>45
cluster 6(N=76) has 5 sub-cluster at 5 (19), ICL=22<>45
cluster 9(N=562) has 2 sub-cluster at 2 (6), ICL=20<>45
cluster 5(N=143) has 6 sub-cluster at 6 (24), ICL=17<>45
cluster 2(N=18) has 2 sub-cluster at 2 (18), ICL=13<>45
cluster 8(N=160) has 4 sub-cluster at 4 (61), ICL=13<>45
cluster 7(N=37) has 2 sub-cluster at 2 (8), ICL=8.9<>45
cluster 11(N=25) has 2 sub-cluster at 2 (57), ICL=3.1<>45
cluster 2(N=18) has 2 sub-cluster at 2 (18), ICL=0<>45
Model Refinement takes 0.22 mins(max 1: 0.067)
Fit Model 6 of (6/10) K=12->12 N=9682
EM 11 takes 0.017 mins, 11 iterations

cluster 11(N=915) has 3 sub-cluster at 3 (8), ICL=51<>48
split 11 into 3 clusters
cluster 9(N=391) has 2 sub-cluster at 2 (11), ICL=40<>48
cluster 5(N=155) has 4 sub-cluster at 4 (10), ICL=38<>48
cluster 10(N=50) has 2 sub-cluster at 2 (100), ICL=38<>48
cluster 8(N=1120) has 2 sub-cluster at 2 (8), ICL=32<>48
cluster 3(N=263) has 2 sub-cluster at 2 (10), ICL=24<>48
cluster 4(N=335) has 2 sub-cluster at 2 (7), ICL=22<>48
cluster 6(N=72) has 3 sub-cluster at 5 (27), ICL=17<>48
cluster 2(N=44) has 3 sub-cluster at 3 (14), ICL=9.8<>48
cluster 7(N=316) has 2 sub-cluster at 2 (8), ICL=7.4<>48
cluster 2(N=44) has 3 sub-cluster at 3 (14), ICL=0<>48
Model Refinement takes 0.25 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=11->13 N=9682
EM 13 takes 0.033 mins, 10 iterations

cluster 13(N=36) has 2 sub-cluster at 2 (100), ICL=54<>48
split 13 into 2 clusters
cluster 5(N=154) has 4 sub-cluster at 4 (13), ICL=43<>48
cluster 9(N=391) has 2 sub-cluster at 2 (11), ICL=40<>48
cluster 8(N=1120) has 2 sub-cluster at 2 (5), ICL=31<>48
cluster 4(N=320) has 2 sub-cluster at 2 (5), ICL=24<>48
cluster 6(N=72) has 3 sub-cluster at 5 (27), ICL=17<>48
cluster 3(N=259) has 2 sub-cluster at 2 (13), ICL=16<>48
cluster 10(N=51) has 2 sub-cluster at 2 (13), ICL=8.9<>48
cluster 7(N=316) has 2 sub-cluster at 2 (13), ICL=7.4<>48
cluster 11(N=391) has 6 sub-cluster at 7 (51), ICL=0.95<>48
cluster 3(N=259) has 2 sub-cluster at 2 (13), ICL=0<>48
Model Refinement takes 0.28 mins(max 1: 0.05)
Fit Model 8 of (6/10) K=13->14 N=9682
EM 14 takes 0.083 mins, 50 iterations

cluster 5(N=155) has 4 sub-cluster at 4 (20), ICL=41<>48
cluster 8(N=1121) has 2 sub-cluster at 2 (7), ICL=41<>48
cluster 9(N=391) has 2 sub-cluster at 2 (11), ICL=40<>48
cluster 6(N=72) has 7 sub-cluster at 8 (56), ICL=17<>48
cluster 4(N=185) has 5 sub-cluster at 7 (48), ICL=13<>48
cluster 2(N=161) has 7 sub-cluster at 8 (44), ICL=13<>48
cluster 3(N=291) has 2 sub-cluster at 2 (7), ICL=11<>48
cluster 13(N=39) has 3 sub-cluster at 3 (6), ICL=10<>48
cluster 10(N=51) has 2 sub-cluster at 2 (13), ICL=8.9<>48
cluster 7(N=316) has 2 sub-cluster at 2 (11), ICL=7.6<>48
cluster 11(N=393) has 7 sub-cluster at 8 (40), ICL=2.5<>48
cluster 2(N=161) has 7 sub-cluster at 8 (44), ICL=0<>48
Model Refinement takes 0.3 mins(max 1: 0.067)
Fit Model 9 of (6/10) K=14->14 N=9682
EM 14 takes 0.1 mins, 50 iterations

Process completed at9

Major Iteration (Trans) (6/4) takes 1.7 mins
filtered from above:318
filtered from below:0

cluster 1(N=151) has 2 sub-cluster at 2 (7), ICL=151<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (7), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations

cluster 2(N=100) has 3 sub-cluster at 3 (6), ICL=113<>25
split 2 into 3 clusters
cluster 2(N=100) has 3 sub-cluster at 3 (6), ICL=0<>25
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 15 iterations

cluster 4(N=65) has 3 sub-cluster at 3 (9), ICL=49<>28
split 4 into 3 clusters
cluster 3(N=76) has 3 sub-cluster at 3 (26), ICL=14<>28
cluster 1(N=407) has 7 sub-cluster at 8 (38), ICL=7.9<>28
cluster 2(N=61) has 2 sub-cluster at 2 (100), ICL=5.6<>28
cluster 1(N=407) has 7 sub-cluster at 8 (38), ICL=0<>28
Model Refinement takes 0.05 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=4->6 N=1210
EM 6 takes 0 mins, 8 iterations

cluster 6(N=70) has 2 sub-cluster at 2 (100), ICL=52<>31
split 6 into 2 clusters
cluster 5(N=29) has 2 sub-cluster at 2 (37), ICL=33<>31
split 5 into 2 clusters
cluster 4(N=44) has 2 sub-cluster at 2 (19), ICL=24<>31
cluster 3(N=133) has 4 sub-cluster at 4 (29), ICL=14<>31
cluster 2(N=133) has 2 sub-cluster at 2 (100), ICL=11<>31
cluster 2(N=133) has 2 sub-cluster at 2 (100), ICL=0<>31
Model Refinement takes 0.067 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=6->8 N=2420
EM 7 takes 0 mins, 9 iterations

cluster 2(N=223) has 2 sub-cluster at 2 (13), ICL=52<>34
split 2 into 2 clusters
cluster 7(N=155) has 8 sub-cluster at 8 (39), ICL=28<>34
cluster 4(N=105) has 4 sub-cluster at 4 (32), ICL=27<>34
cluster 5(N=48) has 2 sub-cluster at 2 (5), ICL=20<>34
cluster 3(N=297) has 2 sub-cluster at 2 (6), ICL=16<>34
cluster 1(N=1595) has 3 sub-cluster at 3 (8), ICL=10<>34
cluster 6(N=13) has 2 sub-cluster at 2 (6), ICL=2.9<>34
cluster 1(N=1595) has 3 sub-cluster at 3 (8), ICL=0<>34
Model Refinement takes 0.13 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=7->8 N=4841
EM 8 takes 0.017 mins, 12 iterations

cluster 4(N=578) has 2 sub-cluster at 3 (8), ICL=43<>37
split 4 into 2 clusters
cluster 1(N=3276) has 3 sub-cluster at 3 (10), ICL=36<>37
cluster 6(N=75) has 2 sub-cluster at 2 (14), ICL=35<>37
cluster 8(N=255) has 3 sub-cluster at 3 (19), ICL=29<>37
cluster 5(N=182) has 8 sub-cluster at 8 (33), ICL=21<>37
cluster 7(N=35) has 2 sub-cluster at 2 (13), ICL=11<>37
cluster 2(N=453) has 3 sub-cluster at 3 (17), ICL=7.5<>37
cluster 1(N=3276) has 3 sub-cluster at 3 (10), ICL=0<>37
Model Refinement takes 0.15 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=8->9 N=9682
EM 9 takes 0.017 mins, 8 iterations

cluster 1(N=6476) has 3 sub-cluster at 3 (7), ICL=175<>40
split 1 into 3 clusters
cluster 9(N=557) has 3 sub-cluster at 3 (12), ICL=70<>40
split 9 into 3 clusters
cluster 2(N=916) has 3 sub-cluster at 3 (10), ICL=56<>40
split 2 into 3 clusters
cluster 6(N=392) has 2 sub-cluster at 2 (13), ICL=43<>40
split 6 into 2 clusters
cluster 7(N=123) has 2 sub-cluster at 2 (8), ICL=32<>40
cluster 5(N=488) has 2 sub-cluster at 2 (6), ICL=25<>40
cluster 8(N=76) has 3 sub-cluster at 4 (12), ICL=7.4<>40
cluster 1(N=6476) has 3 sub-cluster at 3 (7), ICL=0<>40
Model Refinement takes 0.23 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=9->16 N=9682
EM 16 takes 0.033 mins, 11 iterations

cluster 6(N=49) has 2 sub-cluster at 2 (100), ICL=48<>40
split 6 into 2 clusters
cluster 7(N=51) has 2 sub-cluster at 2 (100), ICL=40<>40
cluster 12(N=124) has 7 sub-cluster at 8 (27), ICL=27<>40
cluster 9(N=439) has 2 sub-cluster at 2 (7), ICL=21<>40
cluster 16(N=79) has 2 sub-cluster at 2 (13), ICL=21<>40
cluster 10(N=220) has 3 sub-cluster at 3 (17), ICL=20<>40
cluster 14(N=365) has 7 sub-cluster at 7 (34), ICL=19<>40
cluster 11(N=221) has 6 sub-cluster at 7 (32), ICL=10<>40
cluster 15(N=172) has 6 sub-cluster at 8 (25), ICL=8.9<>40
cluster 13(N=75) has 3 sub-cluster at 4 (12), ICL=6.6<>40
cluster 3(N=307) has 6 sub-cluster at 6 (32), ICL=5<>40
cluster 4(N=387) has 3 sub-cluster at 3 (33), ICL=2.2<>40
cluster 3(N=307) has 6 sub-cluster at 6 (32), ICL=0<>40
Model Refinement takes 0.37 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=16->17 N=9682
EM 17 takes 0.05 mins, 24 iterations

cluster 13(N=123) has 2 sub-cluster at 2 (9), ICL=32<>40
cluster 17(N=80) has 2 sub-cluster at 2 (15), ICL=21<>40
cluster 10(N=410) has 2 sub-cluster at 2 (12), ICL=17<>40
cluster 15(N=373) has 2 sub-cluster at 2 (5), ICL=16<>40
cluster 14(N=74) has 3 sub-cluster at 4 (46), ICL=16<>40
cluster 11(N=212) has 3 sub-cluster at 3 (16), ICL=14<>40
cluster 16(N=170) has 4 sub-cluster at 5 (23), ICL=12<>40
cluster 6(N=51) has 3 sub-cluster at 3 (12), ICL=11<>40
cluster 12(N=230) has 6 sub-cluster at 8 (26), ICL=8.4<>40
cluster 3(N=307) has 2 sub-cluster at 2 (8), ICL=6<>40
cluster 4(N=383) has 7 sub-cluster at 8 (34), ICL=2.1<>40
cluster 3(N=307) has 2 sub-cluster at 2 (8), ICL=0<>40
Model Refinement takes 0.37 mins(max 1: 0.05)
Fit Model 9 of (6/10) K=17->17 N=9682
EM 17 takes 0.12 mins, 50 iterations

Process completed at9

Major Iteration (Trans) (6/4) takes 1.6 mins
Fit Model 1 of 10 with 8 clusters
=> results in  8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in  13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in  19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in  21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in  21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

! Emergency stop.
<read *> 
         
l.15 ^^M
        
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’

SUMMARY: processing the following file failed:
  ‘immunoClust.Rnw’

Error: Vignette re-building failed.
Execution halted