############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r immApex -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data immApex ### ############################################################################## ############################################################################## * checking for file 'immApex/DESCRIPTION' ... OK * preparing 'immApex': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'immApex.Rmd' using rmarkdown Quitting from immApex.Rmd:200-209 [unnamed-chunk-10] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `inferCDR()`: ! Please provide a list of V gene reference sequence using 'get.IMGT()'. --- Backtrace: ▆ 1. └─immApex::inferCDR(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'immApex.Rmd' failed with diagnostics: Please provide a list of V gene reference sequence using 'get.IMGT()'. --- failed re-building 'immApex.Rmd' SUMMARY: processing the following file failed: 'immApex.Rmd' Error: Vignette re-building failed. Execution halted