############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data hca ### ############################################################################## ############################################################################## * checking for file ‘hca/DESCRIPTION’ ... OK * preparing ‘hca’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘hca_manifest_vignette.Rmd’ using rmarkdown Quitting from hca_manifest_vignette.Rmd:109-117 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.tbl_hca_column_check()`: ! At minimum, these columns must be included in your tibble: fileId = "hits[*].files[*].uuid", name = "hits[*].files[*].name", fileFormat = "hits[*].files[*].format", version = "hits[*].files[*].version", projectTitle = "hits[*].projects[*].projectTitle[*]", projectId = "hits[*].projects[*].projectId[*]", url = "hits[*].files[*].url" --- Backtrace: ▆ 1. └─hca::files(filters = file_filter) 2. └─hca:::.as_tbl_hca(response$content, columns, "files_tbl_hca") 3. └─hca:::.tbl_hca_column_check(tbl_hca, required_columns, type) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'hca_manifest_vignette.Rmd' failed with diagnostics: At minimum, these columns must be included in your tibble: fileId = "hits[*].files[*].uuid", name = "hits[*].files[*].name", fileFormat = "hits[*].files[*].format", version = "hits[*].files[*].version", projectTitle = "hits[*].projects[*].projectTitle[*]", projectId = "hits[*].projects[*].projectId[*]", url = "hits[*].files[*].url" --- failed re-building ‘hca_manifest_vignette.Rmd’ --- re-building ‘hca_vignette.Rmd’ using rmarkdown Quitting from hca_vignette.Rmd:67-69 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.hca_GET()`: ! Bad Request (HTTP 400). --- Backtrace: ▆ 1. └─hca::projects(size = 200) 2. └─hca:::.index_GET(...) 3. └─hca:::.hca_GET(index_path) 4. └─httr::stop_for_status(response) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'hca_vignette.Rmd' failed with diagnostics: Bad Request (HTTP 400). --- failed re-building ‘hca_vignette.Rmd’ SUMMARY: processing the following files failed: ‘hca_manifest_vignette.Rmd’ ‘hca_vignette.Rmd’ Error: Vignette re-building failed. Execution halted