############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data gatom ### ############################################################################## ############################################################################## * checking for file ‘gatom/DESCRIPTION’ ... OK * preparing ‘gatom’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘gatom-tutorial.Rmd’ using rmarkdown Quitting from gatom-tutorial.Rmd:458-471 [unnamed-chunk-38] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `readRDS()`: ! cannot read from connection --- Backtrace: ▆ 1. └─base::readRDS(url("http://artyomovlab.wustl.edu/publications/supp_materials/GATOM/network.combined.rds")) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'gatom-tutorial.Rmd' failed with diagnostics: cannot read from connection --- failed re-building ‘gatom-tutorial.Rmd’ SUMMARY: processing the following file failed: ‘gatom-tutorial.Rmd’ Error: Vignette re-building failed. Execution halted