############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data fastreeR ### ############################################################################## ############################################################################## * checking for file ‘fastreeR/DESCRIPTION’ ... OK * preparing ‘fastreeR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘fastreeR_vignette.Rmd’ using rmarkdown VCF2ISTATS Num of Ind = 150 VCF2DIST 150 0 VCF2TREE VCF2TREE Quitting from fastreeR_vignette.Rmd:306-333 [unnamed-chunk-12] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `get()`: ! object 'ggtree' not found --- Backtrace: ▆ 1. ├─base::print(p) 2. └─ggtree:::print.ggtree(p) 3. └─ggtree:::is_ggtree_interactive() 4. └─yulab.utils::get_cache_item("ggtree") 5. └─base::get(item, envir = env, inherits = FALSE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'fastreeR_vignette.Rmd' failed with diagnostics: object 'ggtree' not found --- failed re-building ‘fastreeR_vignette.Rmd’ SUMMARY: processing the following file failed: ‘fastreeR_vignette.Rmd’ Error: Vignette re-building failed. Execution halted