############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data epivizrChart ### ############################################################################## ############################################################################## * checking for file ‘epivizrChart/DESCRIPTION’ ... OK * preparing ‘epivizrChart’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘IntegrationWithIGVjs.Rmd’ using rmarkdown --- finished re-building ‘IntegrationWithIGVjs.Rmd’ --- re-building ‘IntegrationWithShiny.Rmd’ using rmarkdown --- finished re-building ‘IntegrationWithShiny.Rmd’ --- re-building ‘IntroToEpivizrChart.Rmd’ using rmarkdown Quitting from IntroToEpivizrChart.Rmd:350-354 [unnamed-chunk-25] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! failed to load resource name: AH49015 title: 57epigenomes.N.pc.gz reason: 1 resources failed to download --- Backtrace: ▆ 1. ├─epi[["AH49015"]] 2. └─epi[["AH49015"]] 3. └─AnnotationHub (local) .local(x, i, j = j, ...) 4. └─AnnotationHub:::.Hub_get1(x[idx], force = force, verbose = verbose) 5. └─base::tryCatch(...) 6. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 8. └─value[[3L]](cond) 9. └─base::tryCatch(...) 10. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 11. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 12. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'IntroToEpivizrChart.Rmd' failed with diagnostics: failed to load resource name: AH49015 title: 57epigenomes.N.pc.gz reason: 1 resources failed to download --- failed re-building ‘IntroToEpivizrChart.Rmd’ --- re-building ‘VisualizeSumExp.Rmd’ using rmarkdown --- finished re-building ‘VisualizeSumExp.Rmd’ SUMMARY: processing the following file failed: ‘IntroToEpivizrChart.Rmd’ Error: Vignette re-building failed. Execution halted