############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data epiNEM ### ############################################################################## ############################################################################## * checking for file ‘epiNEM/DESCRIPTION’ ... OK * preparing ‘epiNEM’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘epiNEM.Rmd’ using rmarkdown trying URL 'https://stringdb-downloads.org/download/protein.links.v11.0/4932.protein.links.v11.0.txt.gz' Content type 'application/octet-stream' length 10562593 bytes (10.1 MB) ============================ downloaded 5.7 MB Quitting from epiNEM.Rmd:265-349 [unnamed-chunk-14] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `download.file()`: ! download from 'https://stringdb-downloads.org/download/protein.links.v11.0/4932.protein.links.v11.0.txt.gz' failed --- Backtrace: ▆ 1. └─string_db$get_interactions(...) 2. └─STRINGdb (local) load() 3. └─STRINGdb::downloadAbsentFile(url, oD = input_directory) 4. └─utils::download.file(urlStr, temp) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'epiNEM.Rmd' failed with diagnostics: download from 'https://stringdb-downloads.org/download/protein.links.v11.0/4932.protein.links.v11.0.txt.gz' failed --- failed re-building ‘epiNEM.Rmd’ SUMMARY: processing the following file failed: ‘epiNEM.Rmd’ Error: Vignette re-building failed. Execution halted