############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data cBioPortalData ### ############################################################################## ############################################################################## * checking for file ‘cBioPortalData/DESCRIPTION’ ... OK * preparing ‘cBioPortalData’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘cBioPortalData.Rmd’ using rmarkdown --- finished re-building ‘cBioPortalData.Rmd’ --- re-building ‘cBioPortalDataErrors.Rmd’ using rmarkdown --- finished re-building ‘cBioPortalDataErrors.Rmd’ --- re-building ‘cBioPortalRClient.Rmd’ using rmarkdown --- finished re-building ‘cBioPortalRClient.Rmd’ --- re-building ‘cgdsrMigration.Rmd’ using rmarkdown Quitting from cgdsrMigration.Rmd:405-413 [unnamed-chunk-29] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.invoke_fun()`: ! Service Unavailable (HTTP 503). --- Backtrace: ▆ 1. └─cBioPortalData::cBioPortalData(...) 2. └─cBioPortalData:::.portalExperiments(...) 3. └─cBioPortalData::molecularProfiles(api = api, studyId = studyId) 4. └─cBioPortalData:::.invoke_fun(...) 5. └─httr::stop_for_status(res) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'cgdsrMigration.Rmd' failed with diagnostics: Service Unavailable (HTTP 503). --- failed re-building ‘cgdsrMigration.Rmd’ SUMMARY: processing the following file failed: ‘cgdsrMigration.Rmd’ Error: Vignette re-building failed. Execution halted