############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 biodbUniprot ### ############################################################################## ############################################################################## * checking for file ‘biodbUniprot/DESCRIPTION’ ... OK * preparing ‘biodbUniprot’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘biodbUniprot.Rmd’ using rmarkdown INFO [16:31:45.629] Loading definitions from package biodb version 1.18.0. INFO [16:31:47.100] Loading definitions from package biodbChebi version 1.16.0. INFO [16:31:47.131] Loading definitions from package biodbHmdb version 1.16.0. INFO [16:31:47.161] Loading definitions from package biodbNcbi version 1.14.0. INFO [16:31:47.195] Loading definitions from package biodbNci version 1.14.0. INFO [16:31:47.202] Loading definitions from package biodbUniprot version 1.16.0. INFO [16:31:47.314] Load 2 contents, from /home/biocbuild/.cache/R/biodb/uniprot-958d776f924f3e7a3bae586fa731b40c. Quitting from biodbUniprot.Rmd:67-69 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'biodbUniprot.Rmd' failed with diagnostics: `chk::vld_null(encoding) || chk::vld_whole_number(encoding) || ` must be TRUE` chk::vld_string(encoding)` must be TRUE. --- failed re-building ‘biodbUniprot.Rmd’ SUMMARY: processing the following file failed: ‘biodbUniprot.Rmd’ Error: Vignette re-building failed. Execution halted