############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data biodbChebi ### ############################################################################## ############################################################################## * checking for file ‘biodbChebi/DESCRIPTION’ ... OK * preparing ‘biodbChebi’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘biodbChebi.Rmd’ using rmarkdown INFO [20:01:56.686] Loading definitions from package biodb version 1.16.0. INFO [20:02:00.149] Loading definitions from package biodbChebi version 1.14.0. INFO [20:02:00.182] Loading definitions from package biodbHmdb version 1.14.0. INFO [20:02:00.217] Loading definitions from package biodbNcbi version 1.12.0. INFO [20:02:00.244] Loading definitions from package biodbNci version 1.12.0. INFO [20:02:00.253] Loading definitions from package biodbUniprot version 1.14.0. Quitting from biodbChebi.Rmd:72-74 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! attempt to apply non-function ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'biodbChebi.Rmd' failed with diagnostics: attempt to apply non-function --- failed re-building ‘biodbChebi.Rmd’ SUMMARY: processing the following file failed: ‘biodbChebi.Rmd’ Error: Vignette re-building failed. Execution halted