############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data basilisk ### ############################################################################## ############################################################################## * checking for file ‘basilisk/DESCRIPTION’ ... OK * preparing ‘basilisk’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘motivation.Rmd’ using rmarkdown Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='conda.anaconda.org', port=443): Read timed out. (read timeout=9.15)")': /conda-forge/linux-64/repodata.json.zst Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='conda.anaconda.org', port=443): Read timed out. (read timeout=9.15)")': /conda-forge/noarch/repodata.json.zst Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='conda.anaconda.org', port=443): Read timed out. (read timeout=9.15)")': /conda-forge/linux-64/repodata.json.zst Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='conda.anaconda.org', port=443): Read timed out. (read timeout=9.15)")': /conda-forge/noarch/repodata.json.zst Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='conda.anaconda.org', port=443): Read timed out. (read timeout=9.15)")': /conda-forge/noarch/repodata.json.zst Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='conda.anaconda.org', port=443): Read timed out. (read timeout=9.15)")': /conda-forge/linux-64/repodata.json.zst failed CondaHTTPError: HTTP 000 CONNECTION FAILED for url Elapsed: - An HTTP error occurred when trying to retrieve this URL. HTTP errors are often intermittent, and a simple retry will get you on your way. 'https//conda.anaconda.org/conda-forge/linux-64' Quitting from motivation.Rmd:279-284 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! Error creating conda environment '/tmp/RtmpQepBua/Rbuild287251794c2a8d/basilisk/vignettes/basilisk-vignette-test/1.20.0' [exit code 1] --- Backtrace: ▆ 1. └─basilisk::createLocalBasiliskEnv(...) 2. └─basilisk::setupBasiliskEnv(envpath, ...) 3. └─reticulate::conda_install(...) 4. └─reticulate::conda_create(...) 5. └─reticulate:::stopf(fmt, envname, result, call. = FALSE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'motivation.Rmd' failed with diagnostics: Error creating conda environment '/tmp/RtmpQepBua/Rbuild287251794c2a8d/basilisk/vignettes/basilisk-vignette-test/1.20.0' [exit code 1] --- failed re-building ‘motivation.Rmd’ SUMMARY: processing the following file failed: ‘motivation.Rmd’ Error: Vignette re-building failed. Execution halted