############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL bandle ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'bandle' ... ** this is package 'bandle' version '1.12.0' ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 14.2.0' using C++14 g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppArmadillo/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/BH/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Bessel2ndKind.cpp -o Bessel2ndKind.o In file included from E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/math/special_functions/bessel.hpp:30, from Bessel2ndKind.cpp:3: E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/math/special_functions/detail/bessel_ik.hpp: In function 'int boost::math::detail::bessel_ik(T, T, T*, T*, int, const Policy&) [with T = long double; Policy = boost::math::policies::policy, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]': E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/math/special_functions/detail/bessel_ik.hpp:421:22: warning: 'n' may be used uninitialized [-Wmaybe-uninitialized] 421 | T z = (u + n % 2); | ~~^~~ E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/math/special_functions/detail/bessel_ik.hpp:311:14: note: 'n' was declared here 311 | unsigned n, k; | ^ E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/math/special_functions/detail/bessel_ik.hpp:421:11: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 421 | T z = (u + n % 2); | ^ E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/math/special_functions/detail/bessel_ik.hpp:308:7: note: 'u' was declared here 308 | T u, Iv, Kv, Kv1, Ku, Ku1, fv; | ^ g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppArmadillo/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/BH/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppArmadillo/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/BH/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dmvtCpp.cpp -o dmvtCpp.o g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppArmadillo/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/BH/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c leapfrogGPcpp.cpp -o leapfrogGPcpp.o g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppArmadillo/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/BH/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pg_sample.cpp -o pg_sample.o g++ -shared -s -static-libgcc -o bandle.dll tmp.def Bessel2ndKind.o RcppExports.o dmvtCpp.o leapfrogGPcpp.o pg_sample.o -fopenmp -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lRlapack -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lRblas -lgfortran -lquadmath -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR installing to E:/biocbuild/bbs-3.21-bioc/R/library/00LOCK-bandle/00new/bandle/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function from function 'posteriorEstimates' in package 'bandle' Creating a generic function from function 'bandleJoint' in package 'bandle' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bandle)