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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 TAPseq
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* checking for file ‘TAPseq/DESCRIPTION’ ... OK
* preparing ‘TAPseq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘tapseq_primer_design.Rmd’ using rmarkdown
--- finished re-building ‘tapseq_primer_design.Rmd’

--- re-building ‘tapseq_target_genes.Rmd’ using rmarkdown
Performing log-normalization
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|

Quitting from tapseq_target_genes.Rmd:54-59 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! The `slot` argument of `GetAssayData()` was deprecated in SeuratObject
  5.0.0 and is now defunct.
ℹ Please use the `layer` argument instead.
---
Backtrace:
    ▆
 1. └─TAPseq::selectTargetGenes(bone_marrow_genex)
 2.   ├─Seurat::GetAssayData(object, slot = "counts", assay = "RNA")
 3.   └─SeuratObject:::GetAssayData.Seurat(object, slot = "counts", assay = "RNA")
 4.     └─SeuratObject::.Deprecate(...)
 5.       └─lifecycle::deprecate_stop(...)
 6.         └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tapseq_target_genes.Rmd' failed with diagnostics:
The `slot` argument of `GetAssayData()` was deprecated in SeuratObject
5.0.0 and is now defunct.
ℹ Please use the `layer` argument instead.
--- failed re-building ‘tapseq_target_genes.Rmd’

SUMMARY: processing the following file failed:
  ‘tapseq_target_genes.Rmd’

Error: Vignette re-building failed.
Execution halted