############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rigraphlib.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rigraphlib_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib.Rcheck’ * using R version 4.5.0 RC (2025-04-04 r88126) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0 * running under: macOS Ventura 13.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘Rigraphlib/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Rigraphlib’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Rigraphlib’ can be installed ... WARNING Found the following significant warnings: /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:366:4: warning: explicitly assigning value of variable of type 'FILE *' (aka 'struct __sFILE *') to itself [-Wself-assign] /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/api/mps.c:1297:19: warning: explicitly assigning value of variable of type 'GLPAIJ *' (aka 'struct GLPAIJ *') to itself [-Wself-assign] /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi06.c:565:26: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpapi06.c:574:20: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/draft/glpios01.c:224:17: warning: explicitly assigning value of variable of type 'IOSNPD *' (aka 'struct IOSNPD *') to itself [-Wself-assign] /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/intopt/covgen.c:155:21: warning: variable 'type' is uninitialized when used here [-Wuninitialized] /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/misc/ks.c:428:14: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:687:17: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] /Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib/_temp/source/vendor/glpk/mpl/mpl6.c:854:20: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] See ‘/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib.Rcheck/00install.out’ for details. * checking installed package size ... INFO installed size is 24.0Mb sub-directories of 1Mb or more: igraph 23.9Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE 'LinkingTo' field is unused: package has no 'src' directory * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/Users/biocbuild/bbs-3.21-bioc/meat/Rigraphlib.Rcheck/00check.log’ for details.