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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:QRscore.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings QRscore_1.2.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/QRscore.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘QRscore/DESCRIPTION’ ... OK
* this is package ‘QRscore’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘QRscore’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.add_test_result: no visible binding for global variable ‘var’
.estimate_nb_parameters: no visible global function definition for
  ‘coef’
.extract_and_format_results: no visible global function definition for
  ‘p.adjust’
.fit_and_validate_zinb: no visible global function definition for
  ‘pchisq’
.fit_and_validate_zinb: no visible global function definition for
  ‘logLik’
.pairwise_tests: no visible global function definition for ‘var’
.qrscore_flex_one_sample: no visible global function definition for
  ‘setNames’
.run_qrscore_two_sample: no visible global function definition for
  ‘wilcox.test’
QRscore_ZINB_nSamples: no visible global function definition for
  ‘pchisq’
computeweight_disp: no visible global function definition for ‘var’
computeweight_mean: no visible global function definition for ‘var’
rank_x: no visible global function definition for ‘runif’
Undefined global functions or variables:
  coef logLik p.adjust pchisq runif setNames var wilcox.test
Consider adding
  importFrom("stats", "coef", "logLik", "p.adjust", "pchisq", "runif",
             "setNames", "var", "wilcox.test")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  ‘QRscore.Rmd’ ‘fig1.jpg’
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
QRscoreGenetest 198.979  0.844 114.889
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking package vignettes ... NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.22-bioc/meat/QRscore.Rcheck/00check.log’
for details.