############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data PRONE ### ############################################################################## ############################################################################## * checking for file ‘PRONE/DESCRIPTION’ ... OK * preparing ‘PRONE’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Differential_Expression.Rmd’ using rmarkdown 2025-09-22 21:38:53.057 R[12187:415574048] XType: com.apple.fonts is not accessible. 2025-09-22 21:38:53.058 R[12187:415574048] XType: XTFontStaticRegistry is enabled. Quitting from Differential_Expression.Rmd:209-217 [unnamed-chunk-13] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Differential_Expression.Rmd' failed with diagnostics: The `axis.title.x` theme element must be a object. --- failed re-building ‘Differential_Expression.Rmd’ --- re-building ‘Imputation.Rmd’ using rmarkdown --- finished re-building ‘Imputation.Rmd’ --- re-building ‘Normalization.Rmd’ using rmarkdown --- finished re-building ‘Normalization.Rmd’ --- re-building ‘PRONE.Rmd’ using rmarkdown --- finished re-building ‘PRONE.Rmd’ --- re-building ‘Preprocessing.Rmd’ using rmarkdown --- finished re-building ‘Preprocessing.Rmd’ --- re-building ‘Spike_In_Data.Rmd’ using rmarkdown --- finished re-building ‘Spike_In_Data.Rmd’ SUMMARY: processing the following file failed: ‘Differential_Expression.Rmd’ Error: Vignette re-building failed. Execution halted