############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DeconvoBuddies ### ############################################################################## ############################################################################## * checking for file ‘DeconvoBuddies/DESCRIPTION’ ... OK * preparing ‘DeconvoBuddies’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘DeconvoBuddies.Rmd’ using rmarkdown Quitting from DeconvoBuddies.Rmd:34-79 [vignetteSetup] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `citation()`: ! there is no package called 'BisqueRNA' --- Backtrace: ▆ 1. └─utils::citation("BisqueRNA") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'DeconvoBuddies.Rmd' failed with diagnostics: there is no package called 'BisqueRNA' --- failed re-building ‘DeconvoBuddies.Rmd’ --- re-building ‘Deconvolution_Benchmark_DLPFC.Rmd’ using rmarkdown Quitting from Deconvolution_Benchmark_DLPFC.Rmd:135-155 [load_packages] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'BisqueRNA' --- Backtrace: ▆ 1. └─base::library("BisqueRNA") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Deconvolution_Benchmark_DLPFC.Rmd' failed with diagnostics: there is no package called 'BisqueRNA' --- failed re-building ‘Deconvolution_Benchmark_DLPFC.Rmd’ --- re-building ‘Marker_Finding.Rmd’ using rmarkdown --- finished re-building ‘Marker_Finding.Rmd’ SUMMARY: processing the following files failed: ‘DeconvoBuddies.Rmd’ ‘Deconvolution_Benchmark_DLPFC.Rmd’ Error: Vignette re-building failed. Execution halted