##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DeconvoBuddies
###
##############################################################################
##############################################################################


* checking for file ‘DeconvoBuddies/DESCRIPTION’ ... OK
* preparing ‘DeconvoBuddies’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DeconvoBuddies.Rmd’ using rmarkdown

Quitting from DeconvoBuddies.Rmd:34-79 [vignetteSetup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `citation()`:
! there is no package called 'BisqueRNA'
---
Backtrace:
    ▆
 1. └─utils::citation("BisqueRNA")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'DeconvoBuddies.Rmd' failed with diagnostics:
there is no package called 'BisqueRNA'
--- failed re-building ‘DeconvoBuddies.Rmd’

--- re-building ‘Deconvolution_Benchmark_DLPFC.Rmd’ using rmarkdown

Quitting from Deconvolution_Benchmark_DLPFC.Rmd:135-155 [load_packages]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'BisqueRNA'
---
Backtrace:
    ▆
 1. └─base::library("BisqueRNA")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Deconvolution_Benchmark_DLPFC.Rmd' failed with diagnostics:
there is no package called 'BisqueRNA'
--- failed re-building ‘Deconvolution_Benchmark_DLPFC.Rmd’

--- re-building ‘Marker_Finding.Rmd’ using rmarkdown
2025-08-11 18:31:08.450 R[16087:307910737] XType: com.apple.fonts is not accessible.
2025-08-11 18:31:08.451 R[16087:307910737] XType: XTFontStaticRegistry is enabled.
--- finished re-building ‘Marker_Finding.Rmd’

SUMMARY: processing the following files failed:
  ‘DeconvoBuddies.Rmd’ ‘Deconvolution_Benchmark_DLPFC.Rmd’

Error: Vignette re-building failed.
Execution halted