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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CatsCradle
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* checking for file ‘CatsCradle/DESCRIPTION’ ... OK
* preparing ‘CatsCradle’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CatsCradle.Rmd’ using rmarkdown

Quitting from CatsCradle.Rmd:59-63 [[CC2]]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `data.frame()`:
! arguments imply differing number of rows: 0, 540
---
Backtrace:
    ▆
 1. └─Seurat::DimPlot(exSeuratObj, cols = "polychrome")
 2.   └─base::cbind(embed, meta)
 3.     └─base::cbind(deparse.level, ...)
 4.       └─base::data.frame(..., check.names = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CatsCradle.Rmd' failed with diagnostics:
arguments imply differing number of rows: 0, 540
--- failed re-building ‘CatsCradle.Rmd’

--- re-building ‘CatsCradleExampleData.Rmd’ using rmarkdown
--- finished re-building ‘CatsCradleExampleData.Rmd’

--- re-building ‘CatsCradleQuickStart.Rmd’ using rmarkdown

Quitting from CatsCradleQuickStart.Rmd:39-44 [[QS1]]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `data.frame()`:
! arguments imply differing number of rows: 0, 540
---
Backtrace:
    ▆
 1. └─Seurat::DimPlot(exSeuratObj, cols = "polychrome")
 2.   └─base::cbind(embed, meta)
 3.     └─base::cbind(deparse.level, ...)
 4.       └─base::data.frame(..., check.names = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CatsCradleQuickStart.Rmd' failed with diagnostics:
arguments imply differing number of rows: 0, 540
--- failed re-building ‘CatsCradleQuickStart.Rmd’

--- re-building ‘CatsCradleSingleCellExperimentQuickStart.Rmd’ using rmarkdown
2025-11-03 16:23:06.862 R[52288:717518181] XType: com.apple.fonts is not accessible.
2025-11-03 16:23:06.862 R[52288:717518181] XType: XTFontStaticRegistry is enabled.
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
--- finished re-building ‘CatsCradleSingleCellExperimentQuickStart.Rmd’

--- re-building ‘CatsCradleSpatial.Rmd’ using rmarkdown
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
--- finished re-building ‘CatsCradleSpatial.Rmd’

SUMMARY: processing the following files failed:
  ‘CatsCradle.Rmd’ ‘CatsCradleQuickStart.Rmd’

Error: Vignette re-building failed.
Execution halted