############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data AlphaMissenseR ### ############################################################################## ############################################################################## * checking for file ‘AlphaMissenseR/DESCRIPTION’ ... OK * preparing ‘AlphaMissenseR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘alphafold.Rmd’ using rmarkdown Quitting from alphafold.Rmd:82-84 [median-pathogenicity] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `af_prediction_view()`: ! 'af_prediction_view()' could not find UniProt accession 'P35557' --- Backtrace: ▆ 1. └─AlphaMissenseR::af_prediction_view(P35557_aa) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'alphafold.Rmd' failed with diagnostics: 'af_prediction_view()' could not find UniProt accession 'P35557' --- failed re-building ‘alphafold.Rmd’ --- re-building ‘benchmarking.Rmd’ using rmarkdown --- finished re-building ‘benchmarking.Rmd’ --- re-building ‘clinvar.Rmd’ using rmarkdown --- finished re-building ‘clinvar.Rmd’ --- re-building ‘introduction.Rmd’ using rmarkdown --- finished re-building ‘introduction.Rmd’ --- re-building ‘issues.Rmd’ using rmarkdown --- finished re-building ‘issues.Rmd’ SUMMARY: processing the following file failed: ‘alphafold.Rmd’ Error: Vignette re-building failed. Execution halted