############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r annotation -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data annotation ### ############################################################################## ############################################################################## * checking for file 'annotation/DESCRIPTION' ... OK * preparing 'annotation': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'Annotating_Genomic_Ranges.Rmd' using rmarkdown Quitting from Annotating_Genomic_Ranges.Rmd:130-132 [unnamed-chunk-12] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `keepStandardChromosomes()`: ! could not find function "keepStandardChromosomes" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Annotating_Genomic_Ranges.Rmd' failed with diagnostics: could not find function "keepStandardChromosomes" --- failed re-building 'Annotating_Genomic_Ranges.Rmd' --- re-building 'Annotation_Resources.Rmd' using rmarkdown Quitting from Annotation_Resources.Rmd:529-538 [unnamed-chunk-29] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `seqlevelsStyle()`: ! could not find function "seqlevelsStyle" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Annotation_Resources.Rmd' failed with diagnostics: could not find function "seqlevelsStyle" --- failed re-building 'Annotation_Resources.Rmd' SUMMARY: processing the following files failed: 'Annotating_Genomic_Ranges.Rmd' 'Annotation_Resources.Rmd' Error: Vignette re-building failed. Execution halted