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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:bugphyzz.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings bugphyzz_1.5.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.23-data-experiment/meat/bugphyzz.Rcheck’
* using R Under development (unstable) (2025-10-20 r88955)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘bugphyzz/DESCRIPTION’ ... OK
* this is package ‘bugphyzz’ version ‘1.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bugphyzz’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘bugphyzz-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getTaxonSignatures
> ### Title: Get Taxon Signatures
> ### Aliases: getTaxonSignatures
> 
> ### ** Examples
> 
> taxid <- "562"
> taxonName <- "Escherichia coli"
> bp <- importBugphyzz()
Error in `httr2::req_perform()`:
! HTTP 504 Gateway Timeout.
Backtrace:
     ▆
  1. └─bugphyzz::importBugphyzz()
  2.   └─bugphyzz:::.downloadResource(version, forceDownload)
  3.     └─bugphyzz:::.downloadZ(suffix, forceDownload)
  4.       └─httr2::req_perform(req)
  5.         └─httr2:::handle_resp(req, resp, error_call = error_call)
  6.           └─httr2:::resp_failure_cnd(req, resp, error_call = error_call)
  7.             ├─rlang::catch_cnd(...)
  8.             │ ├─rlang::eval_bare(...)
  9.             │ ├─base::tryCatch(...)
 10.             │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 11.             │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 12.             │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 13.             │ └─base::force(expr)
 14.             └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
    5.         └─httr2:::handle_resp(req, resp, error_call = error_call)
    6.           └─httr2:::resp_failure_cnd(req, resp, error_call = error_call)
    7.             ├─rlang::catch_cnd(...)
    8.             │ ├─rlang::eval_bare(...)
    9.             │ ├─base::tryCatch(...)
   10.             │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   11.             │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   12.             │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   13.             │ └─base::force(expr)
   14.             └─rlang::abort(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 28 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  ‘/home/biocbuild/bbs-3.23-data-experiment/meat/bugphyzz.Rcheck/00check.log’
for details.