############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CTCF ### ############################################################################## ############################################################################## * checking for file ‘CTCF/DESCRIPTION’ ... OK * preparing ‘CTCF’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘CTCF.Rmd’ using rmarkdown Quitting from CTCF.Rmd:126-130 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `h()`: ! error in evaluating the argument 'x' in selecting a method for function 'sort': could not find function "keepStandardChromosomes" --- Backtrace: ▆ 1. ├─CTCF_hg38_all %>% keepStandardChromosomes() %>% sort() 2. ├─methods (local) sort(.) 3. └─base::.handleSimpleError(...) 4. └─base (local) h(simpleError(msg, call)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'CTCF.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'sort': could not find function "keepStandardChromosomes" --- failed re-building ‘CTCF.Rmd’ SUMMARY: processing the following file failed: ‘CTCF.Rmd’ Error: Vignette re-building failed. Execution halted