############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD check --install=check:Rigraphlib.install-out.txt --library=/home/rapidbuild/bbs-3.22-bioc-rapid/R/site-library --timings Rigraphlib_1.1.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib.Rcheck’ * using R version 4.5.0 (2025-04-11) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 * running under: Ubuntu 24.04.2 LTS * using session charset: UTF-8 * checking for file ‘Rigraphlib/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Rigraphlib’ version ‘1.1.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Rigraphlib’ can be installed ... WARNING Found the following significant warnings: /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/arithchk.c:114:30: warning: zero-length gnu_printf format string [-Wformat-zero-length] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/iio.c:91:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/iio.c:123:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/backspac.c:47:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/due.c:40:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/due.c:53:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/endfile.c:46:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rdfmt.c:39:23: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rdfmt.c:42:23: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsfe.c:67:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:85:20: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:106:28: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:158:47: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:164:32: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:187:15: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:242:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:246:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:250:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:348:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:403:37: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:427:37: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:444:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:455:37: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:475:37: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:510:26: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:530:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:540:45: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/rsne.c:602:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:313:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:325:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:352:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:105:19: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/lread.c:786:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/lwrite.c:141:31: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/lwrite.c:166:57: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/lwrite.c:190:15: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/open.c:246:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/open.c:256:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/open.c:258:26: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/signal_.c:17:16: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/sue.c:38:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/sue.c:61:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/wref.c:140:45: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/wref.c:236:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/wref.c:286:15: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/wsfe.c:55:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/wsle.c:17:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/wsne.c:17:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/dfe.c:104:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/f2c/dfe.c:126:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/vendor/glpk/npp/npp6.c:853:17: warning: ‘__builtin_memset’ writing between 256 and 17179869176 bytes into a region of size 248 overflows the destination [-Wstringop-overflow=] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/src/core/array.pmt:107:5: warning: ‘igraph_array3_resize’ is deprecated [-Wdeprecated-declarations] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/src/core/array.pmt:107:5: warning: ‘igraph_array3_int_resize’ is deprecated [-Wdeprecated-declarations] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/src/core/array.pmt:107:5: warning: ‘igraph_array3_char_resize’ is deprecated [-Wdeprecated-declarations] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/src/core/array.pmt:107:5: warning: ‘igraph_array3_bool_resize’ is deprecated [-Wdeprecated-declarations] /media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib/_temp/source/src/core/matrix.c:234:13: warning: ‘igraph_vector_e_tol’ is deprecated [-Wdeprecated-declarations] See ‘/media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib.Rcheck/00install.out’ for details. * checking installed package size ... INFO installed size is 41.9Mb sub-directories of 1Mb or more: igraph 41.8Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE 'LinkingTo' field is unused: package has no 'src' directory * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/Rigraphlib.Rcheck/00check.log’ for details.