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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc-gpu/R/bin/R CMD build --keep-empty-dirs --no-resave-data RbowtieCuda
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* checking for file ‘RbowtieCuda/DESCRIPTION’ ... OK
* preparing ‘RbowtieCuda’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... OK
* cleaning src
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
WARNING: directory ‘RbowtieCuda/src/nvbio/build/CMakeFiles/3.28.3/CompilerIdC/tmp’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/CMakeFiles/3.28.3/CompilerIdCXX/tmp’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/CMakeFiles/CMakeScratch’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/CMakeFiles/pkgRedirects’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/contrib/moderngpu/CMakeFiles/moderngpu.dir/src’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvBowtie/CMakeFiles/nvBowtie.dir/bowtie2/cuda’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/basic/cuda’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/fmindex’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/io/fmindex’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/io/output’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/io/reads’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/io/sequence’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/sufsort’ is empty
* building ‘RbowtieCuda_1.1.1.tar.gz’
Warning: file 'RbowtieCuda/src/nvbio/contrib/zlib-1.2.7/configure' did not have execute permissions: corrected