############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r spatialDE -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data spatialDE ### ############################################################################## ############################################################################## * checking for file 'spatialDE/DESCRIPTION' ... OK * preparing 'spatialDE': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'spatialDE.Rmd' using rmarkdown :: [Info] :: Mirror: https://www.python.org/ftp/python :: [Info] :: Mirror: https://downloads.python.org/pypy/versions.json :: [Info] :: Mirror: https://api.github.com/repos/oracle/graalpython/releases :: [Installing] :: 3.11.9 ... :: [Error] :: error installing "core" component MSI. :: [Error] :: couldn't install 3.11.9 Quitting from spatialDE.Rmd:122-125 [stabilize] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `pyenv_python()`: ! Python NA does not appear to be installed. Try installing it with install_python(version = "NA"). --- Backtrace: ▆ 1. └─spatialDE::stabilize(Rep11_MOB_0) 2. └─basilisk::basiliskStart(spatialDE_env, testload = "scipy.optimize") 3. └─basilisk::obtainEnvironmentPath(env) 4. └─basilisk::setupBasiliskEnv(...) 5. ├─base::suppressMessages(install_python(version)) 6. │ └─base::withCallingHandlers(...) 7. └─reticulate::install_python(version) 8. └─reticulate:::pyenv_python(version = version) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'spatialDE.Rmd' failed with diagnostics: Python NA does not appear to be installed. Try installing it with install_python(version = "NA"). --- failed re-building 'spatialDE.Rmd' SUMMARY: processing the following file failed: 'spatialDE.Rmd' Error: Vignette re-building failed. Execution halted