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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:sesame.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings sesame_1.27.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/sesame.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sesame/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sesame’ version ‘1.27.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sesame’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                user system elapsed
imputeBetasByGenomicNeighbors 37.059  1.376  38.677
inferSex                      25.410  1.211  26.727
sesameQC_calcStats            23.228  1.667  25.045
sesameQC_plotHeatSNPs         19.736  1.401  21.266
imputeBetas                   18.156  1.442  19.719
ELBAR                         16.089  2.791  19.085
inferSpecies                  15.750  0.667  16.618
diffRefSet                    15.775  0.625  16.501
sesameQC_plotBar              13.790  0.417  14.301
compareMouseStrainReference   13.487  0.447  14.034
sesameQC_plotBetaByDesign     12.234  1.493  13.839
getRefSet                     12.911  0.433  13.407
compareReference              11.763  0.476  12.323
matchDesign                   11.281  0.672  12.051
DML                            9.405  1.218  10.732
visualizeGene                  9.329  0.683  10.092
sdf_read_table                 9.375  0.410   9.860
DMR                            9.406  0.278   9.770
estimateLeukocyte              8.372  0.534   8.958
inferTissue                    7.046  1.441   8.567
inferStrain                    7.490  0.601   8.137
getMask                        6.788  0.619   7.465
dyeBiasCorrMostBalanced        7.078  0.292   7.436
dyeBiasNL                      6.323  0.475   6.836
createUCSCtrack                6.409  0.330   6.816
deIdentify                     6.127  0.365   6.550
openSesame                     5.633  0.840   6.537
probeSuccessRate               5.783  0.469   6.303
reIdentify                     5.435  0.304   5.788
bisConversionControl           4.877  0.265   5.199
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK