############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r scviR -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data scviR ### ############################################################################## ############################################################################## * checking for file 'scviR/DESCRIPTION' ... OK * preparing 'scviR': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'citeseq_tut.Rmd' using rmarkdown --- finished re-building 'citeseq_tut.Rmd' --- re-building 'compch12.Rmd' using rmarkdown :: [Info] :: Mirror: https://www.python.org/ftp/python :: [Info] :: Mirror: https://downloads.python.org/pypy/versions.json :: [Info] :: Mirror: https://api.github.com/repos/oracle/graalpython/releases :: [Installing] :: 3.10.11 ... :: [Error] :: error installing "core" component MSI. :: [Error] :: couldn't install 3.10.11 Quitting from compch12.Rmd:49-53 [getdat2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `pyenv_python()`: ! Python NA does not appear to be installed. Try installing it with install_python(version = "NA"). --- Backtrace: ▆ 1. └─scviR::getTotalVI5k10kAdata() 2. └─scviR::anndataR() 3. └─basilisk::basiliskStart(bsklenv, testload = "anndata") 4. └─basilisk::obtainEnvironmentPath(env) 5. └─basilisk::setupBasiliskEnv(...) 6. ├─base::suppressMessages(install_python(version)) 7. │ └─base::withCallingHandlers(...) 8. └─reticulate::install_python(version) 9. └─reticulate:::pyenv_python(version = version) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'compch12.Rmd' failed with diagnostics: Python NA does not appear to be installed. Try installing it with install_python(version = "NA"). --- failed re-building 'compch12.Rmd' --- re-building 'new_citeseq.Rmd' using rmarkdown :: [Info] :: Mirror: https://www.python.org/ftp/python :: [Info] :: Mirror: https://downloads.python.org/pypy/versions.json :: [Info] :: Mirror: https://api.github.com/repos/oracle/graalpython/releases :: [Installing] :: 3.10.11 ... :: [Error] :: error installing "core" component MSI. :: [Error] :: couldn't install 3.10.11 Quitting from new_citeseq.Rmd:41-48 [doe44] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `pyenv_python()`: ! Python NA does not appear to be installed. Try installing it with install_python(version = "NA"). --- Backtrace: ▆ 1. └─scviR::muonR() 2. └─basilisk::basiliskStart(bsklenv, testload = "anndata") 3. └─basilisk::obtainEnvironmentPath(env) 4. └─basilisk::setupBasiliskEnv(...) 5. ├─base::suppressMessages(install_python(version)) 6. │ └─base::withCallingHandlers(...) 7. └─reticulate::install_python(version) 8. └─reticulate:::pyenv_python(version = version) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'new_citeseq.Rmd' failed with diagnostics: Python NA does not appear to be installed. Try installing it with install_python(version = "NA"). --- failed re-building 'new_citeseq.Rmd' --- re-building 'scviR.Rmd' using rmarkdown --- finished re-building 'scviR.Rmd' SUMMARY: processing the following files failed: 'compch12.Rmd' 'new_citeseq.Rmd' Error: Vignette re-building failed. Execution halted