############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scuttle ### ############################################################################## ############################################################################## * checking for file ‘scuttle/DESCRIPTION’ ... OK * preparing ‘scuttle’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘misc.Rmd’ using rmarkdown Quitting from misc.Rmd:31-40 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'scRNAseq' --- Backtrace: ▆ 1. └─base::library(scRNAseq) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'misc.Rmd' failed with diagnostics: there is no package called 'scRNAseq' --- failed re-building ‘misc.Rmd’ --- re-building ‘norm.Rmd’ using rmarkdown Quitting from norm.Rmd:31-40 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'scRNAseq' --- Backtrace: ▆ 1. └─base::library(scRNAseq) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'norm.Rmd' failed with diagnostics: there is no package called 'scRNAseq' --- failed re-building ‘norm.Rmd’ --- re-building ‘qc.Rmd’ using rmarkdown Quitting from qc.Rmd:34-38 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'scRNAseq' --- Backtrace: ▆ 1. └─base::library(scRNAseq) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'qc.Rmd' failed with diagnostics: there is no package called 'scRNAseq' --- failed re-building ‘qc.Rmd’ SUMMARY: processing the following files failed: ‘misc.Rmd’ ‘norm.Rmd’ ‘qc.Rmd’ Error: Vignette re-building failed. Execution halted