############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data qcmetrics ### ############################################################################## ############################################################################## * checking for file ‘qcmetrics/DESCRIPTION’ ... OK * preparing ‘qcmetrics’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘qcmetrics.Rmd’ using rmarkdown Quitting from qcmetrics.Rmd:220-226 [protqc3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `data.frame()`: ! arguments imply differing number of rows: 23, 21 --- Backtrace: ▆ 1. ├─MSnbase::plotMzDelta(exp, plot = FALSE, verbose = FALSE) 2. └─MSnbase::plotMzDelta(exp, plot = FALSE, verbose = FALSE) 3. └─MSnbase (local) .local(object, ...) 4. └─MSnbase:::plotMzDelta_MSnExp(...) 5. └─BiocGenerics::cbind(PSMatch::getAminoAcids(), x_offset, y_offset) 6. ├─BiocGenerics (local) standardGeneric("cbind") 7. │ ├─BiocGenerics::eval(mc, env) 8. │ └─base::eval(mc, env) 9. │ └─base::eval(mc, env) 10. └─base::cbind(...) 11. └─base::cbind(deparse.level, ...) 12. └─base::data.frame(..., check.names = FALSE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'qcmetrics.Rmd' failed with diagnostics: arguments imply differing number of rows: 23, 21 --- failed re-building ‘qcmetrics.Rmd’ SUMMARY: processing the following file failed: ‘qcmetrics.Rmd’ Error: Vignette re-building failed. Execution halted