############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data netprioR ### ############################################################################## ############################################################################## * checking for file ‘netprioR/DESCRIPTION’ ... OK * preparing ‘netprioR’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘netprioR.Rmd’ using rmarkdown Quitting from netprioR.Rmd:140-142 [unnamed-chunk-11] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! `tbl_df()` was deprecated in dplyr 1.0.0 and is now defunct. ℹ Please use `tibble::as_tibble()` instead. --- Backtrace: ▆ 1. ├─base::plot(np, which = "all") 2. ├─netprioR:::plot.netprioR(np, which = "all") 3. │ ├─ggplot2::ggplot(...) 4. │ ├─... %>% mutate(Network = factor(Network, levels = Network)) 5. │ ├─stats::weights(x) 6. │ └─netprioR::weights(x) 7. │ └─netprioR (local) .local(object, ...) 8. │ └─... %>% arrange(desc(Weight)) 9. ├─dplyr::mutate(., Network = factor(Network, levels = Network)) 10. ├─dplyr::arrange(., desc(Weight)) 11. ├─dplyr::mutate(., Weight = Weight/sum(Weight)) 12. ├─dplyr::arrange(., desc(Weight)) 13. └─dplyr::tbl_df(.) 14. └─lifecycle::deprecate_stop("1.0.0", "tbl_df()", "tibble::as_tibble()") 15. └─lifecycle:::deprecate_stop0(msg) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'netprioR.Rmd' failed with diagnostics: `tbl_df()` was deprecated in dplyr 1.0.0 and is now defunct. ℹ Please use `tibble::as_tibble()` instead. --- failed re-building ‘netprioR.Rmd’ SUMMARY: processing the following file failed: ‘netprioR.Rmd’ Error: Vignette re-building failed. Execution halted