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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data msqrob2
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* checking for file ‘msqrob2/DESCRIPTION’ ... OK
* preparing ‘msqrob2’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cptac.Rmd’ using rmarkdown

Quitting from cptac.Rmd:306-344 [unnamed-chunk-21]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `longFormat()`:
! 'longFormat' is defunct.
Use 'longForm' instead.
See help("Defunct")
---
Backtrace:
    ▆
 1. ├─base::data.frame(longFormat(pePlot))
 2. └─QFeatures::longFormat(pePlot)
 3.   └─base::.Defunct("longForm")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'cptac.Rmd' failed with diagnostics:
'longFormat' is defunct.
Use 'longForm' instead.
See help("Defunct")
--- failed re-building ‘cptac.Rmd’

SUMMARY: processing the following file failed:
  ‘cptac.Rmd’

Error: Vignette re-building failed.
Execution halted