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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data msPurity
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* checking for file ‘msPurity/DESCRIPTION’ ... OK
* preparing ‘msPurity’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’ using rmarkdown
Sizes of mz and intensity arrays don't match.

Quitting from msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd:91-94 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `object@backend$getPeakList()`:
! dims [product 0] do not match the length of object [2160]
---
Backtrace:
     ▆
  1. ├─msPurity::frag4feature(pa = pa, xcmsObj = xcmsObj)
  2. └─msPurity::frag4feature(pa = pa, xcmsObj = xcmsObj)
  3.   └─msPurity:::getMS2scans(grpm, pa@fileList, mzRback = pa@mzRback)
  4.     └─msPurity:::getscans(filepths, mzRback)
  5.       └─plyr::alply(...)
  6.         └─plyr::llply(...)
  7.           ├─plyr:::loop_apply(n, do.ply)
  8.           └─plyr (local) `<fn>`(4L)
  9.             └─msPurity (local) .fun(piece, ...)
 10.               ├─mzR::peaks(mr)
 11.               └─mzR::peaks(mr)
 12.                 └─mzR (local) .local(object, ...)
 13.                   └─mzR:::.peaks(object, scans)
 14.                     └─object@backend$getPeakList(scans)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd' failed with diagnostics:
dims [product 0] do not match the length of object [2160]
--- failed re-building ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’

--- re-building ‘msPurity-spectral-database-vignette.Rmd’ using rmarkdown
--- finished re-building ‘msPurity-spectral-database-vignette.Rmd’

--- re-building ‘msPurity-vignette.Rmd’ using rmarkdown
--- finished re-building ‘msPurity-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted