############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data monaLisa ### ############################################################################## ############################################################################## * checking for file ‘monaLisa/DESCRIPTION’ ... OK * preparing ‘monaLisa’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘monaLisa.Rmd’ using rmarkdown Quitting from monaLisa.Rmd:208-217 [loadlib] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'BSgenome.Mmusculus.UCSC.mm10' --- Backtrace: ▆ 1. └─base::library(BSgenome.Mmusculus.UCSC.mm10) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'monaLisa.Rmd' failed with diagnostics: there is no package called 'BSgenome.Mmusculus.UCSC.mm10' --- failed re-building ‘monaLisa.Rmd’ --- re-building ‘selecting_motifs_with_randLassoStabSel.Rmd’ using rmarkdown Quitting from selecting_motifs_with_randLassoStabSel.Rmd:87-97 [libs] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'BSgenome.Mmusculus.UCSC.mm10' --- Backtrace: ▆ 1. └─base::library(BSgenome.Mmusculus.UCSC.mm10) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'selecting_motifs_with_randLassoStabSel.Rmd' failed with diagnostics: there is no package called 'BSgenome.Mmusculus.UCSC.mm10' --- failed re-building ‘selecting_motifs_with_randLassoStabSel.Rmd’ SUMMARY: processing the following files failed: ‘monaLisa.Rmd’ ‘selecting_motifs_with_randLassoStabSel.Rmd’ Error: Vignette re-building failed. Execution halted