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### Running command:
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###   rm -rf miRspongeR.buildbin-libdir && mkdir miRspongeR.buildbin-libdir && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL --build --library=miRspongeR.buildbin-libdir miRspongeR_2.13.4.tar.gz
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* installing *source* package 'miRspongeR' ...
** this is package 'miRspongeR' version '2.13.4'
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.2.0'
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
Error in loadNamespace(x) : there is no package called 'zlibbioc'
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
gcc   -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c OCG_algorithm.c -o OCG_algorithm.o
OCG_algorithm.c: In function 'getOCGclusters':
OCG_algorithm.c:568:2: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
  568 |  for(j=0;j<CardMax;j++)
      |  ^~~
OCG_algorithm.c:571:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  571 |   k=0;
      |   ^
OCG_algorithm.c:445:52: warning: variable 'flag3' set but not used [-Wunused-but-set-variable]
  445 |   int   NbY, Nl, Long, NewLong, cli, flag1, flag2, flag3;
      |                                                    ^~~~~
OCG_algorithm.c:790:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
  790 |     for (j=0; j<i; j++)
      |     ^~~
OCG_algorithm.c:794:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  794 |       for (k=0; k<N; k++) Clas[k]=0;
      |       ^~~
OCG_algorithm.c:475:5: warning: '*Cl' may be used uninitialized [-Wmaybe-uninitialized]
  475 |   Cl[0][0]=1;
      |   ~~^~~
Error in loadNamespace(x) : there is no package called 'zlibbioc'
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
gcc   -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c complex.c -o complex.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c edge_duplicates.cpp -o edge_duplicates.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c linkcomm_edgesims.cpp -o linkcomm_edgesims.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c linkcomm_edgesims_all.cpp -o linkcomm_edgesims_all.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c linkcomm_functions.cpp -o linkcomm_functions.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c linkcomm_hclust.cpp -o linkcomm_hclust.o
Error in loadNamespace(x) : there is no package called 'zlibbioc'
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
gcc   -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c linkcomm_init.c -o linkcomm_init.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c linkcomm_linkdensities.cpp -o linkcomm_linkdensities.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c linkcommhclust_order.cpp -o linkcommhclust_order.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c read_OCG.cpp -o read_OCG.o
Error in loadNamespace(x) : there is no package called 'zlibbioc'
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
gcc   -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c registerDynamicSymbol.c -o registerDynamicSymbol.o
/bin/sh: -c: line 1: unexpected EOF while looking for matching `"'
/bin/sh: -c: line 1: unexpected EOF while looking for matching `"'
/bin/sh: -c: line 1: unexpected EOF while looking for matching `"'
/bin/sh: -c: line 1: unexpected EOF while looking for matching `"'
g++ -std=gnu++17 -shared -s -static-libgcc -o miRspongeR.dll tmp.def OCG_algorithm.o complex.o edge_duplicates.o linkcomm_edgesims.o linkcomm_edgesims_all.o linkcomm_functions.o linkcomm_hclust.o linkcomm_init.o linkcomm_linkdensities.o linkcommhclust_order.o read_OCG.o registerDynamicSymbol.o -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.22-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.22-bioc/meat/miRspongeR.buildbin-libdir/00LOCK-miRspongeR/00new/miRspongeR/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::combine' by 'dplyr::combine' when loading 'SPONGE'
Warning: replacing previous import 'cvms::font' by 'ggpubr::font' when loading 'SPONGE'
Warning: replacing previous import 'ggplot2::margin' by 'randomForest::margin' when loading 'SPONGE'
Warning: replacing previous import 'dplyr::combine' by 'randomForest::combine' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::exprs' by 'rlang::exprs' when loading 'SPONGE'
Warning: replacing previous import 'rlang::exprs' by 'Biobase::exprs' when loading 'SPONGE'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::combine' by 'dplyr::combine' when loading 'SPONGE'
Warning: replacing previous import 'cvms::font' by 'ggpubr::font' when loading 'SPONGE'
Warning: replacing previous import 'ggplot2::margin' by 'randomForest::margin' when loading 'SPONGE'
Warning: replacing previous import 'dplyr::combine' by 'randomForest::combine' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::exprs' by 'rlang::exprs' when loading 'SPONGE'
Warning: replacing previous import 'rlang::exprs' by 'Biobase::exprs' when loading 'SPONGE'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::combine' by 'dplyr::combine' when loading 'SPONGE'
Warning: replacing previous import 'cvms::font' by 'ggpubr::font' when loading 'SPONGE'
Warning: replacing previous import 'ggplot2::margin' by 'randomForest::margin' when loading 'SPONGE'
Warning: replacing previous import 'dplyr::combine' by 'randomForest::combine' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::exprs' by 'rlang::exprs' when loading 'SPONGE'
Warning: replacing previous import 'rlang::exprs' by 'Biobase::exprs' when loading 'SPONGE'
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'miRspongeR' as miRspongeR_2.13.4.zip
* DONE (miRspongeR)