############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL methylKit ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.22-bioc/R/library' * installing *source* package 'methylKit' ... ** this is package 'methylKit' version '1.35.0' ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 14.2.0' g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rhtslib/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rhtslib/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c methCall.cpp -o methCall.o g++ -std=gnu++17 -shared -s -static-libgcc -o methylKit.dll tmp.def RcppExports.o methCall.o F:/biocbuild/bbs-3.22-bioc/R/library/Rhtslib/usrlib/x64/libhts.a -lm -lbz2 -llzma -lcurl -lnghttp2 -lpsl -lbrotlidec -lbrotlicommon -lbcrypt -lidn2 -lunistring -liconv -lssl -lcrypto -lz -lcrypt32 -lwsock32 -lwldap32 -lssh2 -lgcrypt -lgpg-error -lws2_32 -lzstd -lregex -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.22-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.22-bioc/R/library/00LOCK-methylKit/00new/methylKit/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'GenomeInfoDb' for request: 'seqlengths' when loading 'methylKit' No methods found in package 'GenomeInfoDb' for request: 'seqlevels' when loading 'methylKit' No methods found in package 'GenomeInfoDb' for request: 'seqnames' when loading 'methylKit' No methods found in package 'GenomeInfoDb' for request: 'sortSeqlevels' when loading 'methylKit' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'GenomeInfoDb' for request: 'seqlengths' when loading 'methylKit' No methods found in package 'GenomeInfoDb' for request: 'seqlevels' when loading 'methylKit' No methods found in package 'GenomeInfoDb' for request: 'seqnames' when loading 'methylKit' No methods found in package 'GenomeInfoDb' for request: 'sortSeqlevels' when loading 'methylKit' ** testing if installed package can be loaded from final location No methods found in package 'GenomeInfoDb' for request: 'seqlengths' when loading 'methylKit' No methods found in package 'GenomeInfoDb' for request: 'seqlevels' when loading 'methylKit' No methods found in package 'GenomeInfoDb' for request: 'seqnames' when loading 'methylKit' No methods found in package 'GenomeInfoDb' for request: 'sortSeqlevels' when loading 'methylKit' ** testing if installed package keeps a record of temporary installation path * DONE (methylKit)