############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 hipathia ### ############################################################################## ############################################################################## * checking for file ‘hipathia/DESCRIPTION’ ... OK * preparing ‘hipathia’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘hipathia-vignette.Rmd’ using rmarkdown Quitting from hipathia-vignette.Rmd:326-328 [unnamed-chunk-14] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! failed to load resource name: AH69111 title: meta_graph_info_hsa_v2.rda reason: At vendor/cigraph/src/graph/iterators.c:828 : Cannot create iterator, invalid vertex ID. Invalid vertex ID --- Backtrace: x 1. \-hipathia::load_pathways(species = "hsa") 2. \-hipathia:::load_mgi(species) 3. +-base::suppressMessages(hp[[names(hp)[hp$title == file]]]) 4. | \-base::withCallingHandlers(...) 5. +-hp[[names(hp)[hp$title == file]]] 6. \-hp[[names(hp)[hp$title == file]]] 7. \-AnnotationHub (local) .local(x, i, j = j, ...) 8. \-AnnotationHub:::.Hub_get1(...) 9. \-base::tryCatch(...) 10. \-base (local) tryCatchList(expr, classes, parentenv, handlers) 11. \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 12. \-value[[3L]](cond) 13. \-base::tryCatch(...) 14. \-base (local) tryCatchList(expr, classes, parentenv, handlers) 15. \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 16. \-value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'hipathia-vignette.Rmd' failed with diagnostics: failed to load resource name: AH69111 title: meta_graph_info_hsa_v2.rda reason: At vendor/cigraph/src/graph/iterators.c:828 : Cannot create iterator, invalid vertex ID. Invalid vertex ID --- failed re-building ‘hipathia-vignette.Rmd’ SUMMARY: processing the following file failed: ‘hipathia-vignette.Rmd’ Error: Vignette re-building failed. Execution halted