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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data hca
###
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* checking for file ‘hca/DESCRIPTION’ ... OK
* preparing ‘hca’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘hca_manifest_vignette.Rmd’ using rmarkdown

Quitting from hca_manifest_vignette.Rmd:130-137 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `H5Fopen()`:
! HDF5. File accessibility. Unable to open file.
---
Backtrace:
    ▆
 1. ├─LoomExperiment::import(file_location)
 2. └─LoomExperiment::import(file_location)
 3.   ├─BiocIO::import(FileForFormat(con), ...)
 4.   └─LoomExperiment::import(FileForFormat(con), ...)
 5.     └─LoomExperiment (local) .local(con, ...)
 6.       └─rhdf5::h5ls(con)
 7.         └─rhdf5:::h5checktypeOrOpenLoc(...)
 8.           └─rhdf5::H5Fopen(file, flags = flags, fapl = fapl, native = native)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'hca_manifest_vignette.Rmd' failed with diagnostics:
HDF5. File accessibility. Unable to open file.
--- failed re-building ‘hca_manifest_vignette.Rmd’

--- re-building ‘hca_vignette.Rmd’ using rmarkdown

Quitting from hca_vignette.Rmd:131-136 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_disk()`:
! Timeout was reached [humancellatlas.s3.amazonaws.com]:
Connection timed out after 10002 milliseconds
---
Backtrace:
    ▆
 1. ├─hca::files_download(file_tibble)
 2. │ └─base::mapply(...)
 3. │   └─hca (local) `<fn>`(...)
 4. │     └─httr::GET(...)
 5. │       └─httr:::request_perform(req, hu$handle$handle)
 6. │         ├─httr:::request_fetch(req$output, req$url, handle)
 7. │         └─httr:::request_fetch.write_disk(req$output, req$url, handle)
 8. │           └─curl::curl_fetch_disk(url, x$path, handle = handle)
 9. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'hca_vignette.Rmd' failed with diagnostics:
Timeout was reached [humancellatlas.s3.amazonaws.com]:
Connection timed out after 10002 milliseconds
--- failed re-building ‘hca_vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘hca_manifest_vignette.Rmd’ ‘hca_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted