############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data famat ### ############################################################################## ############################################################################## * checking for file ‘famat/DESCRIPTION’ ... OK * preparing ‘famat’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘famat.Rmd’ using rmarkdown Quitting from famat.Rmd:78-84 [interactions] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.getUrl()`: ! Bad Request (HTTP 400). --- Backtrace: ▆ 1. └─famat::interactions(listk, listr, listw) 2. └─KEGGREST::keggConv("chebi", "compound") 3. └─base::lapply(groups, .keggConv, target = target) 4. └─KEGGREST (local) FUN(X[[i]], ...) 5. └─KEGGREST:::.getUrl(url, .listParser, nameColumn = 1, valueColumn = 2) 6. └─httr::stop_for_status(response) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'famat.Rmd' failed with diagnostics: Bad Request (HTTP 400). --- failed re-building ‘famat.Rmd’ SUMMARY: processing the following file failed: ‘famat.Rmd’ Error: Vignette re-building failed. Execution halted