############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:enrichViewNet.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings enrichViewNet_1.7.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/enrichViewNet.Rcheck’ * using R version 4.5.1 Patched (2025-06-14 r88325) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 16.0.0 (clang-1600.0.26.6) GNU Fortran (GCC) 14.2.0 * running under: macOS Ventura 13.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘enrichViewNet/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘enrichViewNet’ version ‘1.7.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘enrichViewNet’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 1/1 mismatches x[1]: "[{\"metaData\":[{\"name\":\"nodes\",\"version\":\"1.0\"},{\"name\":\"edge x[1]: s\",\"version\":\"1.0\"},{\"name\":\"edgeAttributes\",\"version\":\"1.0\"} x[1]: ,{\"name\":\"nodeAttributes\",\"version\":\"1.0\"},{\"name\":\"cyHiddenAtt x[1]: ributes\",\"version\":\"1.0\"},{\"name\":\"cyNetworkRelations\",\"version\ x[1]: ":\"1.0\"},{\"name\":\"cyGroups\",\"version\":\"1.0\"},{\"name\":\"netw... y[1]: "[{\"metaData\":[{\"name\":\"nodes\",\"version\":\"1.0\"},{\"name\":\"edge y[1]: s\",\"version\":\"1.0\"},{\"name\":\"edgeAttributes\",\"version\":\"1.0\"} y[1]: ,{\"name\":\"nodeAttributes\",\"version\":\"1.0\"},{\"name\":\"cyHiddenAtt y[1]: ributes\",\"version\":\"1.0\"},{\"name\":\"cyNetworkRelations\",\"version\ y[1]: ":\"1.0\"},{\"name\":\"cyGroups\",\"version\":\"1.0\"},{\"name\":\"netw... [ FAIL 3 | WARN 1 | SKIP 0 | PASS 100 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 ERROR See ‘/Users/biocbuild/bbs-3.22-bioc/meat/enrichViewNet.Rcheck/00check.log’ for details.