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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data dmGsea
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* checking for file ‘dmGsea/DESCRIPTION’ ... OK
* preparing ‘dmGsea’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘dmGsea.Rmd’ using rmarkdown

Quitting from dmGsea.Rmd:58-76 [example1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Diagonal values in 'R' must all be equal to 1.
---
Backtrace:
     ▆
  1. └─dmGsea::gsGene(...)
  2.   └─dmGsea:::calcGeneP(...)
  3.     └─parallel::mclapply(...)
  4.       └─base::lapply(X = X, FUN = FUN, ...)
  5.         └─dmGsea (local) FUN(X[[i]], ...)
  6.           ├─base::eval(parse(text = paste0("poolr::", combpMethod, "(p=allp,adjust=combpAdjust,\n            R=Rmatrix)")))
  7.           │ └─base::eval(parse(text = paste0("poolr::", combpMethod, "(p=allp,adjust=combpAdjust,\n            R=Rmatrix)")))
  8.           └─poolr::fisher(p = allp, adjust = combpAdjust, R = Rmatrix)
  9.             └─poolr:::.check.m(R = R, adjust = adjust, m = m, k = k, ...)
 10.               └─poolr::meff(R = R, method = adjust, ...)
 11.                 └─poolr:::.check.R(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'dmGsea.Rmd' failed with diagnostics:
Diagonal values in 'R' must all be equal to 1.
--- failed re-building ‘dmGsea.Rmd’

SUMMARY: processing the following file failed:
  ‘dmGsea.Rmd’

Error: Vignette re-building failed.
Execution halted