############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r crumblr -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data crumblr ### ############################################################################## ############################################################################## * checking for file 'crumblr/DESCRIPTION' ... OK * preparing 'crumblr': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'crumblr.Rmd' using rmarkdown pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. Quitting from crumblr.Rmd:137-147 [dream] Error: processing vignette 'crumblr.Rmd' failed with diagnostics: evaluation nested too deeply: infinite recursion / options(expressions=)? --- failed re-building 'crumblr.Rmd' --- re-building 'crumblr_theory.Rmd' using rmarkdown Quitting from crumblr_theory.Rmd:152-164 [sim1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `mclapply()`: ! 'mc.cores' > 1 is not supported on Windows --- Backtrace: ▆ 1. └─global run_sim() 2. └─base::lapply(...) 3. └─FUN(X[[i]], ...) 4. └─parallel::mclapply(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'crumblr_theory.Rmd' failed with diagnostics: 'mc.cores' > 1 is not supported on Windows --- failed re-building 'crumblr_theory.Rmd' --- re-building 'integration.Rmd' using rmarkdown Quitting from integration.Rmd:108-115 [vp] Error: processing vignette 'integration.Rmd' failed with diagnostics: evaluation nested too deeply: infinite recursion / options(expressions=)? --- failed re-building 'integration.Rmd' SUMMARY: processing the following files failed: 'crumblr.Rmd' 'crumblr_theory.Rmd' 'integration.Rmd' Error: Vignette re-building failed. Execution halted