############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r coMET -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data coMET ### ############################################################################## ############################################################################## * checking for file 'coMET/DESCRIPTION' ... OK * preparing 'coMET': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'coMET.Rnw' using knitr Quitting from coMET.Rnw:336-345 [cometwebPlot] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `errorHandler()`: ! Internal Server Error --- Backtrace: x 1. \-coMET::comet.web(...) 2. \-coMET:::draw.plot.comet.web(config.var, gbl.var, newpage = TRUE) 3. \-coMET:::draw.plot.grid.setup(config.var, gbl.var) 4. \-Gviz::IdeogramTrack(genome = gbl.var$mydata.gen, chromosome = gbl.var$mydata.chr) 5. \-methods::new(...) 6. +-methods::initialize(value, ...) 7. \-Gviz::initialize(value, ...) 8. \-Gviz (local) .local(.Object, ...) 9. \-Gviz:::.cacheGenomes(genome = genome) 10. +-Gviz::.doCache(...) 11. | +-BiocGenerics::eval(expression, envir = callEnv) 12. | \-base::eval(expression, envir = callEnv) 13. | \-base::eval(expression, envir = callEnv) 14. +-rtracklayer::getTable(query) 15. \-rtracklayer::getTable(query) 16. \-rtracklayer (local) .local(object, ...) 17. +-restfulr::read(url$getData$track, query) 18. \-restfulr::read(url$getData$track, query) 19. +-base::tryCatch(...) 20. | \-base (local) tryCatchList(expr, classes, parentenv, handlers) 21. | \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 22. | \-base (local) doTryCatch(return(expr), name, parentenv, handler) 23. \-x@protocol$read(x, cacheInfo) 24. \-restfulr:::handleResponse(content, reader, cache.info, x@errorHandler) 25. \-restfulr (local) errorHandler(responseError) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'coMET.Rnw' failed with diagnostics: Internal Server Error --- failed re-building 'coMET.Rnw' SUMMARY: processing the following file failed: 'coMET.Rnw' Error: Vignette re-building failed. Execution halted