############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data cliProfiler ### ############################################################################## ############################################################################## * checking for file ‘cliProfiler/DESCRIPTION’ ... OK * preparing ‘cliProfiler’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘cliProfilerIntroduction.Rmd’ using rmarkdown Quitting from cliProfilerIntroduction.Rmd:336-345 [unnamed-chunk-20] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.stopOnAvailablePkg()`: ! BSgenome.Mmusculus.UCSC.mm10 package is not currently installed. You first need to install it, which you can do with: library(BiocManager) install("BSgenome.Mmusculus.UCSC.mm10") --- Backtrace: ▆ 1. └─cliProfiler::motifProfile(...) 2. └─BSgenome::getBSgenome(genome) 3. └─BSgenome:::.getBSgenomeObjectFromInstalledPkgname(genome, load.only = load.only) 4. └─BSgenome:::.stopOnAvailablePkg(genome) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'cliProfilerIntroduction.Rmd' failed with diagnostics: BSgenome.Mmusculus.UCSC.mm10 package is not currently installed. You first need to install it, which you can do with: library(BiocManager) install("BSgenome.Mmusculus.UCSC.mm10") --- failed re-building ‘cliProfilerIntroduction.Rmd’ SUMMARY: processing the following file failed: ‘cliProfilerIntroduction.Rmd’ Error: Vignette re-building failed. Execution halted