############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data cellxgenedp ### ############################################################################## ############################################################################## * checking for file ‘cellxgenedp/DESCRIPTION’ ... OK * preparing ‘cellxgenedp’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘a_using_cellxgenedp.Rmd’ using rmarkdown Quitting from a_using_cellxgenedp.Rmd:105-111 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'a_using_cellxgenedp.Rmd' failed with diagnostics: Assigned data `lapply(tbl[idx], unlist)` must be compatible with existing data. ✖ Existing data has 1829 rows. ✖ Element 9 of assigned data has 3658 rows. ℹ Only vectors of size 1 are recycled. Caused by error in `vectbl_recycle_rhs_rows()`: ! Can't recycle input of size 3658 to size 1829. --- failed re-building ‘a_using_cellxgenedp.Rmd’ --- re-building ‘b_case_studies.Rmd’ using rmarkdown Quitting from b_case_studies.Rmd:68-76 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'b_case_studies.Rmd' failed with diagnostics: Assigned data `lapply(tbl[idx], unlist)` must be compatible with existing data. ✖ Existing data has 1829 rows. ✖ Element 9 of assigned data has 3658 rows. ℹ Only vectors of size 1 are recycled. Caused by error in `vectbl_recycle_rhs_rows()`: ! Can't recycle input of size 3658 to size 1829. --- failed re-building ‘b_case_studies.Rmd’ SUMMARY: processing the following files failed: ‘a_using_cellxgenedp.Rmd’ ‘b_case_studies.Rmd’ Error: Vignette re-building failed. Execution halted