############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r biodbUniprot -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data biodbUniprot ### ############################################################################## ############################################################################## * checking for file 'biodbUniprot/DESCRIPTION' ... OK * preparing 'biodbUniprot': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'biodbUniprot.Rmd' using rmarkdown INFO [17:42:00.888] Loading definitions from package biodb version 1.17.1. INFO [17:43:16.682] Loading definitions from package biodbChebi version 1.15.1. INFO [17:43:16.752] Loading definitions from package biodbHmdb version 1.15.1. INFO [17:43:16.841] Loading definitions from package biodbNcbi version 1.13.1. INFO [17:43:16.931] Loading definitions from package biodbNci version 1.13.1. INFO [17:43:17.057] Loading definitions from package biodbUniprot version 1.15.1. INFO [17:43:17.490] Load 2 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/uniprot-958d776f924f3e7a3bae586fa731b40c. Quitting from biodbUniprot.Rmd:67-69 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'biodbUniprot.Rmd' failed with diagnostics: `chk::vld_null(encoding) || chk::vld_whole_number(encoding) || ` must be TRUE` chk::vld_string(encoding)` must be TRUE. --- failed re-building 'biodbUniprot.Rmd' SUMMARY: processing the following file failed: 'biodbUniprot.Rmd' Error: Vignette re-building failed. Execution halted