############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL benchdamic ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ ERROR: dependencies ‘phyloseq’, ‘TreeSummarizedExperiment’, ‘zinbwave’, ‘edgeR’, ‘DESeq2’, ‘limma’, ‘ALDEx2’, ‘corncob’, ‘MAST’, ‘Seurat’, ‘ANCOMBC’, ‘microbiome’, ‘mixOmics’, ‘lme4’, ‘dearseq’, ‘MicrobiomeStat’, ‘Maaslin2’, ‘maaslin3’, ‘GUniFrac’, ‘metagenomeSeq’, ‘MGLM’, ‘ggplot2’, ‘RColorBrewer’, ‘plyr’, ‘reshape2’, ‘ggdendro’, ‘ggridges’, ‘cowplot’, ‘tidytext’ are not available for package ‘benchdamic’ Perhaps try a variation of: install.packages(c('phyloseq', 'TreeSummarizedExperiment', 'zinbwave', 'edgeR', 'DESeq2', 'limma', 'ALDEx2', 'corncob', 'MAST', 'Seurat', 'ANCOMBC', 'microbiome', 'mixOmics', 'lme4', 'dearseq', 'MicrobiomeStat', 'Maaslin2', 'maaslin3', 'GUniFrac', 'metagenomeSeq', 'MGLM', 'ggplot2', 'RColorBrewer', 'plyr', 'reshape2', 'ggdendro', 'ggridges', 'cowplot', 'tidytext')) * removing ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/benchdamic’