############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r TCGAutils -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TCGAutils ### ############################################################################## ############################################################################## * checking for file 'TCGAutils/DESCRIPTION' ... OK * preparing 'TCGAutils': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'TCGAutils.Rmd' using rmarkdown Quitting from TCGAutils.Rmd:212-222 [unnamed-chunk-14] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `seqlevelsStyle(rowRanges(coad[[rag]])) <- "UCSC"`: ! could not find function "seqlevelsStyle<-" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'TCGAutils.Rmd' failed with diagnostics: could not find function "seqlevelsStyle<-" --- failed re-building 'TCGAutils.Rmd' SUMMARY: processing the following file failed: 'TCGAutils.Rmd' Error: Vignette re-building failed. Execution halted