############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TAPseq ### ############################################################################## ############################################################################## * checking for file ‘TAPseq/DESCRIPTION’ ... OK * preparing ‘TAPseq’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘tapseq_primer_design.Rmd’ using rmarkdown Quitting from tapseq_primer_design.Rmd:254-277 [unnamed-chunk-19] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'ggplot2' --- Backtrace: ▆ 1. └─base::library(ggplot2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'tapseq_primer_design.Rmd' failed with diagnostics: there is no package called 'ggplot2' --- failed re-building ‘tapseq_primer_design.Rmd’ --- re-building ‘tapseq_target_genes.Rmd’ using rmarkdown Quitting from tapseq_target_genes.Rmd:35-47 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'Seurat' --- Backtrace: ▆ 1. └─base::library(Seurat) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'tapseq_target_genes.Rmd' failed with diagnostics: there is no package called 'Seurat' --- failed re-building ‘tapseq_target_genes.Rmd’ SUMMARY: processing the following files failed: ‘tapseq_primer_design.Rmd’ ‘tapseq_target_genes.Rmd’ Error: Vignette re-building failed. Execution halted