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### Running command:
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###   F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL SynExtend
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* installing to library 'F:/biocbuild/bbs-3.22-bioc/R/library'
* installing *source* package 'SynExtend' ...
** this is package 'SynExtend' version '1.21.1'
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.2.0'
using Fortran compiler: 'GNU Fortran (GCC) 14.2.0'
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c CDend.c -o CDend.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c CShuffle.c -o CShuffle.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c HungarianAlgo.c -o HungarianAlgo.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c LoserTree.c -o LoserTree.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c MoranI.c -o MoranI.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c NucleotideCounts.c -o NucleotideCounts.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c OnDiskLP.c -o OnDiskLP.o
OnDiskLP.c: In function 'R_LPOOM_cluster':
OnDiskLP.c:2185:5: warning: 'debug_weights' may be used uninitialized [-Wmaybe-uninitialized]
 2185 |     SET_VECTOR_ELT(LIST_VAL, 1, debug_weights);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
OnDiskLP.c:2076:8: note: 'debug_weights' was declared here
 2076 |   SEXP debug_weights, debug_degrees;
      |        ^~~~~~~~~~~~~
OnDiskLP.c:2186:5: warning: 'debug_degrees' may be used uninitialized [-Wmaybe-uninitialized]
 2186 |     SET_VECTOR_ELT(LIST_VAL, 2, debug_degrees);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
OnDiskLP.c:2076:23: note: 'debug_degrees' was declared here
 2076 |   SEXP debug_weights, debug_degrees;
      |                       ^~~~~~~~~~~~~
OnDiskLP.c:2187:5: warning: 'debug_disjoint_sizes' may be used uninitialized [-Wmaybe-uninitialized]
 2187 |     SET_VECTOR_ELT(LIST_VAL, 3, debug_disjoint_sizes);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
OnDiskLP.c:2125:8: note: 'debug_disjoint_sizes' was declared here
 2125 |   SEXP debug_disjoint_sizes;
      |        ^~~~~~~~~~~~~~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c PrefixTrie.c -o PrefixTrie.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c R_init_synextend.c -o R_init_synextend.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c RandomForest.c -o RandomForest.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SEutils.c -o SEutils.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c XORRand.c -o XORRand.o
gfortran      -O2  -mfpmath=sse -msse2 -mstackrealign  -c  _fortran_tabulate.f95 -o _fortran_tabulate.o
gfortran      -O2  -mfpmath=sse -msse2 -mstackrealign  -c  _fortran_utils.f95 -o _fortran_utils.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c calcMIR2C.c -o calcMIR2C.o
gfortran      -O2  -mfpmath=sse -msse2 -mstackrealign  -c  cart_fort.f95 -o cart_fort.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c dendrapply.c -o dendrapply.o
gcc -shared -s -static-libgcc -o SynExtend.dll tmp.def CDend.o CShuffle.o HungarianAlgo.o LoserTree.o MoranI.o NucleotideCounts.o OnDiskLP.o PrefixTrie.o R_init_synextend.o RandomForest.o SEutils.o XORRand.o _fortran_tabulate.o _fortran_utils.o calcMIR2C.o cart_fort.o dendrapply.o -fopenmp -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -lgfortran -lquadmath -LF:/biocbuild/bbs-3.22-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.22-bioc/R/library/00LOCK-SynExtend/00new/SynExtend/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SynExtend)